DE MARCHI, DAVIDE
DE MARCHI, DAVIDE
DIPARTIMENTO DI INGEGNERIA INDUSTRIALE E DELL'INFORMAZIONE
A bioinformatic approach to predict the cross-kingdompotential of plant miRNA in humans
2018-01-01 Bellato, M; Pasotti, L.; DE MARCHI, Davide; Gualtieri, Carla; Magni, P.; Balestrazzi, A.; Macovei, A.
A bioinformatic pipeline for identifying bacterial constitutive promoters based on transcriptomic data analysis
2023-01-01 Dallera, D.; Quaranta, S.; De Marchi, D.; Cipriano, G.; Magni, P.; Pasotti, L.
A Bioinformatic Pipeline Supporting the Selection of Bacterial Promoters with Target Features from the Analysis of Transcriptomic Data
2023-01-01 Dallera, D.; Quaranta, S.; De Marchi, D.; Cipriano, G.; Magni, P.; Pasotti, L.
A Bioinformatics Approach to Explore MicroRNAs as Tools to Bridge Pathways Between Plants and Animals. Is DNA Damage Response (DDR) a Potential Target Process?
2019-01-01 Bellato, M.; De Marchi, D.; Gualtieri, C.; Sauta, E.; Magni, P.; Macovei, A.; Pasotti, L.
A metabolic engineering approach to improve ethanol production from dairy waste by optimized Escherichia coli
2018-01-01 De Marchi, D.; Pasotti, L.; Casanova, M.; Massaiu, I.; Cusella De Angelis, M. G.; Magni, P.
A metabolic engineering approach to optimize ethanol production from dairy waste in Escherichia coli
2018-01-01 De Marchi, D.; Pasotti, L.; Casanova, M.; Massaiu, I.; Cusella De Angelis, M. G.; Magni, P.
Approaches to optimize the CRISPRi gene regulation toolkit in Escherichia coli
2019-01-01 Frusteri Chiacchiera, A.; Bellato, M.; Salibi, E.; De Marchi, D.; Cusella De Angelis, M. G.; Pasotti, L.; Magni, P.
Beyond Hill Equations: Mechanistic Modeling of Inducible Systems to Expand the Predictability of Synthetic Circuits
2019-01-01 De Marchi, D.; Pasotti, L.; Bellato, M.; Magni, P.
Characterization of Bile Acid-Transforming Enzymes By Whole-Cell Microbial Biosensors
2024-01-01 Pasotti, L.; De Marchi, D.; Shaposhnikov, R.; Cusella De Angelis, M. G.; Magni, P.
CRISPR Interference Modules as Low-Burden Logic Inverters in Synthetic Circuits
2022-01-01 Bellato, M.; Frusteri Chiacchiera, A.; Salibi, E.; Casanova, M.; De Marchi, D.; Castagliuolo, I.; Cusella De Angelis, M. G.; Magni, P.; Pasotti, L.
CRISPR Interference Modules as Low-Burden Logic Inverters in Synthetic Circuits
2022-01-01 Bellato, M.; Frusteri Chiacchiera, A.; Salibi, E.; Casanova, M.; De Marchi, D.; Castagliuolo, I.; Cusella De Angelis, M. G.; Magni, P.; Pasotti, L.
Design and Computational Analysis of Synthetic Circuits with a Non-Standard Dead-Cas9 System in Engineered Bacteria
2023-01-01 Pasotti, L.; De Marchi, D.; Shaposhnikov, R.; Cusella De Angelis, M. G.; Magni, P.
Design and Model-Driven Analysis of Synthetic Circuits with the Staphylococcus aureus Dead-Cas9 (sadCas9) as a Programmable Transcriptional Regulator in Bacteria
2024-01-01 De Marchi, D.; Shaposhnikov, R.; Gobaa, S.; Pastorelli, D.; Batt, G.; Magni, P.; Pasotti, L.
Design of a stable ethanologenic bacterial strain without heterologous plasmids and antibiotic resistance genes for efficient ethanol production from concentrated dairy waste
2023-01-01 Pasotti, Lorenzo; De Marchi, Davide; Casanova, Michela; Frusteri Chiacchiera, Angelica; Cusella De Angelis, Maria Gabriella; Calvio, Cinzia; Magni, Paolo
Engineering endogenous fermentative routes in ethanologenic Escherichia coli W for bioethanol production from concentrated whey permeate
2020-01-01 Pasotti, L.; De Marchi, D.; Casanova, M.; Massaiu, I.; Bellato, M.; Cusella De Angelis, M. G.; Calvio, C.; Magni, P.
Evaluation of mathematical methods to in-silico study the metabolic phenotype of E. coli
2018-01-01 Massaiu, I.; Pasotti, L.; De Marchi, D.; Magni, P.
Exploring the putative microRNAs cross-kingdom transfer in Solanum lycopersicum-Meloidogyne incognita interactions
2024-01-01 Leonetti, Paola; Dallera, Debora; DE MARCHI, Davide; Candito, Pamela; Pasotti, Lorenzo; Macovei, Anca
Expression of miRNA from spent pre-implantation embryos culture media
2024-01-01 Omes, Claudia; Conti, Alice; Benedetti, Laura; Tomasoni, Veronica; De Marchi, Davide; Nappi, Rossella E.; Gabriella, Cusella; Ceccarelli, Gabriele
In-Silico and in-Vivo Metabolic Engineering Strategies to Optimize Waste Bioconversion Pathways in Microbial Strains: Two Case Studies on Ethanol and Poly-Gamma-Glutamic Acid Biosynthesis
2018-01-01 Pasotti, L.; Massaiu, I.; Rama, Erlinda; De Marchi, D.; Cavaletti, M.; Casanova, M.; Bellato, M.; Zebre, A.; Mazzini, G.; Cusella De Angelis, M. G.; Calvio, C.; Magni, P.
Mechanistic Models of Inducible Synthetic Circuits for Joint Description of DNA Copy Number, Regulatory Protein Level, and Cell Load
2019-01-01 Pasotti, L.; Bellato, M.; DE MARCHI, Davide; Magni, P.
| Titolo | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|
| A bioinformatic approach to predict the cross-kingdompotential of plant miRNA in humans | 1-gen-2018 | Bellato, M; Pasotti, L.; DE MARCHI, Davide; Gualtieri, Carla; Magni, P.; Balestrazzi, A.; Macovei, A. | |
| A bioinformatic pipeline for identifying bacterial constitutive promoters based on transcriptomic data analysis | 1-gen-2023 | Dallera, D.; Quaranta, S.; De Marchi, D.; Cipriano, G.; Magni, P.; Pasotti, L. | |
| A Bioinformatic Pipeline Supporting the Selection of Bacterial Promoters with Target Features from the Analysis of Transcriptomic Data | 1-gen-2023 | Dallera, D.; Quaranta, S.; De Marchi, D.; Cipriano, G.; Magni, P.; Pasotti, L. | |
| A Bioinformatics Approach to Explore MicroRNAs as Tools to Bridge Pathways Between Plants and Animals. Is DNA Damage Response (DDR) a Potential Target Process? | 1-gen-2019 | Bellato, M.; De Marchi, D.; Gualtieri, C.; Sauta, E.; Magni, P.; Macovei, A.; Pasotti, L. | |
| A metabolic engineering approach to improve ethanol production from dairy waste by optimized Escherichia coli | 1-gen-2018 | De Marchi, D.; Pasotti, L.; Casanova, M.; Massaiu, I.; Cusella De Angelis, M. G.; Magni, P. | |
| A metabolic engineering approach to optimize ethanol production from dairy waste in Escherichia coli | 1-gen-2018 | De Marchi, D.; Pasotti, L.; Casanova, M.; Massaiu, I.; Cusella De Angelis, M. G.; Magni, P. | |
| Approaches to optimize the CRISPRi gene regulation toolkit in Escherichia coli | 1-gen-2019 | Frusteri Chiacchiera, A.; Bellato, M.; Salibi, E.; De Marchi, D.; Cusella De Angelis, M. G.; Pasotti, L.; Magni, P. | |
| Beyond Hill Equations: Mechanistic Modeling of Inducible Systems to Expand the Predictability of Synthetic Circuits | 1-gen-2019 | De Marchi, D.; Pasotti, L.; Bellato, M.; Magni, P. | |
| Characterization of Bile Acid-Transforming Enzymes By Whole-Cell Microbial Biosensors | 1-gen-2024 | Pasotti, L.; De Marchi, D.; Shaposhnikov, R.; Cusella De Angelis, M. G.; Magni, P. | |
| CRISPR Interference Modules as Low-Burden Logic Inverters in Synthetic Circuits | 1-gen-2022 | Bellato, M.; Frusteri Chiacchiera, A.; Salibi, E.; Casanova, M.; De Marchi, D.; Castagliuolo, I.; Cusella De Angelis, M. G.; Magni, P.; Pasotti, L. | |
| CRISPR Interference Modules as Low-Burden Logic Inverters in Synthetic Circuits | 1-gen-2022 | Bellato, M.; Frusteri Chiacchiera, A.; Salibi, E.; Casanova, M.; De Marchi, D.; Castagliuolo, I.; Cusella De Angelis, M. G.; Magni, P.; Pasotti, L. | |
| Design and Computational Analysis of Synthetic Circuits with a Non-Standard Dead-Cas9 System in Engineered Bacteria | 1-gen-2023 | Pasotti, L.; De Marchi, D.; Shaposhnikov, R.; Cusella De Angelis, M. G.; Magni, P. | |
| Design and Model-Driven Analysis of Synthetic Circuits with the Staphylococcus aureus Dead-Cas9 (sadCas9) as a Programmable Transcriptional Regulator in Bacteria | 1-gen-2024 | De Marchi, D.; Shaposhnikov, R.; Gobaa, S.; Pastorelli, D.; Batt, G.; Magni, P.; Pasotti, L. | |
| Design of a stable ethanologenic bacterial strain without heterologous plasmids and antibiotic resistance genes for efficient ethanol production from concentrated dairy waste | 1-gen-2023 | Pasotti, Lorenzo; De Marchi, Davide; Casanova, Michela; Frusteri Chiacchiera, Angelica; Cusella De Angelis, Maria Gabriella; Calvio, Cinzia; Magni, Paolo | |
| Engineering endogenous fermentative routes in ethanologenic Escherichia coli W for bioethanol production from concentrated whey permeate | 1-gen-2020 | Pasotti, L.; De Marchi, D.; Casanova, M.; Massaiu, I.; Bellato, M.; Cusella De Angelis, M. G.; Calvio, C.; Magni, P. | |
| Evaluation of mathematical methods to in-silico study the metabolic phenotype of E. coli | 1-gen-2018 | Massaiu, I.; Pasotti, L.; De Marchi, D.; Magni, P. | |
| Exploring the putative microRNAs cross-kingdom transfer in Solanum lycopersicum-Meloidogyne incognita interactions | 1-gen-2024 | Leonetti, Paola; Dallera, Debora; DE MARCHI, Davide; Candito, Pamela; Pasotti, Lorenzo; Macovei, Anca | |
| Expression of miRNA from spent pre-implantation embryos culture media | 1-gen-2024 | Omes, Claudia; Conti, Alice; Benedetti, Laura; Tomasoni, Veronica; De Marchi, Davide; Nappi, Rossella E.; Gabriella, Cusella; Ceccarelli, Gabriele | |
| In-Silico and in-Vivo Metabolic Engineering Strategies to Optimize Waste Bioconversion Pathways in Microbial Strains: Two Case Studies on Ethanol and Poly-Gamma-Glutamic Acid Biosynthesis | 1-gen-2018 | Pasotti, L.; Massaiu, I.; Rama, Erlinda; De Marchi, D.; Cavaletti, M.; Casanova, M.; Bellato, M.; Zebre, A.; Mazzini, G.; Cusella De Angelis, M. G.; Calvio, C.; Magni, P. | |
| Mechanistic Models of Inducible Synthetic Circuits for Joint Description of DNA Copy Number, Regulatory Protein Level, and Cell Load | 1-gen-2019 | Pasotti, L.; Bellato, M.; DE MARCHI, Davide; Magni, P. |