The coding sequences of five human enterovirus (HEV)-C genotype 105 strains recovered in Italy, Romania and Burundi from patients with upper and lower respiratory tract infections were analyzed and phylogenetically compared with other circulating HEV-C strains. The EV-C105 was closely related with EV-C109 and EV-C118 strains. The European strains were similar to other circulating EV-C105 strains, while the two African EV-C105 clustered in a separate bootstrap-supported (>0.90) branch of P2 and P3 region trees. Minor inconsistencies in the clustering pattern of EV-C105 in the capsid region (P1) and non-capsid region (P3) suggest that recombination may have occurred in EV-C105 group B viruses. In conclusion, phylogenetic analysis revealed the circulation of two distinct EV-C105 lineages in Europe and Africa. A different pattern of evolution could be hypothesized for the two EV-C105 lineages.

Circulation of two Enterovirus C105 (EV-C105) lineages in Europe and Africa.

BALDANTI, FAUSTO
2015-01-01

Abstract

The coding sequences of five human enterovirus (HEV)-C genotype 105 strains recovered in Italy, Romania and Burundi from patients with upper and lower respiratory tract infections were analyzed and phylogenetically compared with other circulating HEV-C strains. The EV-C105 was closely related with EV-C109 and EV-C118 strains. The European strains were similar to other circulating EV-C105 strains, while the two African EV-C105 clustered in a separate bootstrap-supported (>0.90) branch of P2 and P3 region trees. Minor inconsistencies in the clustering pattern of EV-C105 in the capsid region (P1) and non-capsid region (P3) suggest that recombination may have occurred in EV-C105 group B viruses. In conclusion, phylogenetic analysis revealed the circulation of two distinct EV-C105 lineages in Europe and Africa. A different pattern of evolution could be hypothesized for the two EV-C105 lineages.
2015
The Clinical Immunology & Infectious Diseases category covers resources that focus on basic research in clinical and applied allergy, immunology, and infectious disease. Microbiology and virology resources are included in this category as are resources on HIV, AIDS, sexually transmitted diseases (STDs), and hospital infections.
Sì, ma tipo non specificato
Inglese
Internazionale
STAMPA
96
6
1374
1379
6
COMMUNITY-ACQUIRED PNEUMONIA; RESPIRATORY-TRACT INFECTION; MAXIMUM-LIKELIHOOD; GENOMIC ANALYSIS; RECOMBINATION; CHILDREN; PHYLOGENIES; RHINOVIRUS; SEQUENCE; VIRUSES
5
info:eu-repo/semantics/article
262
Piralla, A; Daleno, C; Girello, A; Esposito, S; Baldanti, Fausto
1 Contributo su Rivista::1.1 Articolo in rivista
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11571/1038586
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