B-factors determined with X-ray crystallographic analyses are commonly used to estimate the flexibility degree of atoms, residues, and molecular moieties in biological macromolecules. In this chapter, the most recent studies and applications of B-factors in protein engineering and structural biology are briefly summarized. Particular emphasis is given to the limitations in using B-factors, in order to prevent inappropriate applications. It is eventually predicted that future applications will involve anisotropically refined B-factors, deep learning, and data produced by cryo-EM.

Uses and Abuses of the Atomic Displacement Parameters in Structural Biology

Oliviero Carugo
2022-01-01

Abstract

B-factors determined with X-ray crystallographic analyses are commonly used to estimate the flexibility degree of atoms, residues, and molecular moieties in biological macromolecules. In this chapter, the most recent studies and applications of B-factors in protein engineering and structural biology are briefly summarized. Particular emphasis is given to the limitations in using B-factors, in order to prevent inappropriate applications. It is eventually predicted that future applications will involve anisotropically refined B-factors, deep learning, and data produced by cryo-EM.
2022
Data Mining Techniques for the Life Sciences
Oliviero Carugo
Biochemistry & Biophysics
Esperti anonimi
Inglese
Internazionale
STAMPA
2249
281
298
18
978-1-0716-2095-3
Humana Press
New York
STATI UNITI D'AMERICA
B-factor, Protein Data Bank, Protein flexibility, Protein structure, Structural biology, X-ray crystallography
https://link.springer.com/protocol/10.1007/978-1-0716-2095-3_12
2 Contributo in Volume::2.1 Contributo in volume (Capitolo o Saggio)
1
268
none
Carugo, OLIVIERO ITALO
info:eu-repo/semantics/bookPart
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11571/1468542
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