Among the scientific challenges posed by complex diseases with a strong genetic component, two stand out. One is unveiling the role of rare and common genetic variants; the other is the design of classification models to improve clinical diagnosis and predictive models for prognosis and personalized therapies. In this paper, we present a data fusion framework merging gene, domain, pathway and protein-protein interaction data related to a next generation sequencing epilepsy gene panel. Our method allows integrating association information from multiple genomic sources and aims at highlighting the set of common and rare variants that are capable to trigger the occurrence of a complex disease. When compared to other approaches, our method shows better performances in classifying patients affected by epilepsy.

A Data Fusion Approach to Enhance Association Study in Epilepsy

MARINI, SIMONE;LIMONGELLI, IVAN;RIZZO, ETTORE;MALOVINI, ALBERTO LUIGI;ERRICHIELLO, EDOARDO;VETRO, ANNALISA;ZUFFARDI, ORSETTA;BELLAZZI, RICCARDO
2016-01-01

Abstract

Among the scientific challenges posed by complex diseases with a strong genetic component, two stand out. One is unveiling the role of rare and common genetic variants; the other is the design of classification models to improve clinical diagnosis and predictive models for prognosis and personalized therapies. In this paper, we present a data fusion framework merging gene, domain, pathway and protein-protein interaction data related to a next generation sequencing epilepsy gene panel. Our method allows integrating association information from multiple genomic sources and aims at highlighting the set of common and rare variants that are capable to trigger the occurrence of a complex disease. When compared to other approaches, our method shows better performances in classifying patients affected by epilepsy.
2016
The Research/Laboratory Medicine & Medical Technology category includes resources on pathology, forensic sciences, medical genetics, biotechnology, and biomedical engineering. Coverage also includes clinical monitoring and computing devices; medical instrumentation; and artificial organs, medical implants, and other emerging medical treatments.
Esperti anonimi
Inglese
Internazionale
ELETTRONICO
11
12
e0164940
Medicine (all); Biochemistry, Genetics and Molecular Biology (all); Agricultural and Biological Sciences (all)
http://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0164940&type=printable
9
info:eu-repo/semantics/article
262
Marini, Simone; Limongelli, Ivan; Rizzo, Ettore; Malovini, ALBERTO LUIGI; Errichiello, Edoardo; Vetro, Annalisa; Da, Tan; Zuffardi, Orsetta; Bellazzi,...espandi
1 Contributo su Rivista::1.1 Articolo in rivista
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11571/1179344
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